PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.3KG464600.2.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 203aa    MW: 22475.4 Da    PI: 6.3919
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.3KG464600.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.21.6e-091271661054
                          HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                  HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                          + RR+riNs++  L+el+P+      kK++ +++L +Av+Y+k L
  Pavir.3KG464600.2.p 127 QMRRERINSRLRILQELIPNG-----KKVDISTMLDEAVQYVKFL 166
                          78*****************98.....8****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.383117166IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.4E-12122180IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.2E-7123172IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.6E-11127176IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.5E-6127166IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.13E-9129171No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 203 aa     Download sequence    Send to blast
MEAECTSYWR SVDAISEESE MIEHLQSLLW SSNDVNLVPG LCSSNVPYSL PGGSPFCIND  60
NENSALVRSP PYVDVETLAS THGEKVGSKR KGETHKENHG VKGHAAPLEP GGCKKSKASS  120
QSCYAKQMRR ERINSRLRIL QELIPNGKKV DISTMLDEAV QYVKFLHMQI KLLSSDELWM  180
YSPLAYDSVN MGMHLNSSSV QE*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012700047.19e-96PREDICTED: transcription factor bHLH54-like
TrEMBLK3ZDB61e-95K3ZDB6_SETIT; Uncharacterized protein
STRINGSi024550m3e-95(Setaria italica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G14760.14e-34bHLH family protein